Actually, no. Pokémon of different species mate all the time with no consequence, sometimes even for generations. It’s only if you cross the barriers between egg groups that you start taking risks.
Heya Bill. Over the past few days, Sorrel, my Houndoom, has been showing all the signs of impending motherhood. Realistically, the only ‘mon that could be the father is Spruce, my Skuntank. I’d just like to know if there might be any complications, because of the different species.
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The Pokédex According to Bill 